Schematex
phylo·Hierarchical clustering (cophenetic height)·bioinformatics, education·complexity 1/3·since v0.1.0

Sample clustering dendrogram (no cut)

A bare hierarchical-clustering dendrogram with internal nodes placed at their merge height and a cluster-distance axis — the plain similarity tree before any flat-cluster threshold is applied.

For the data analyst

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phylogenetic·§ Newick / NHX
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Dendrogram: Sample clustering Dendrogram with 5 taxa, dendrogram mode, rectangular layout Sample clustering A B C D E 0 1 2 3 4 5 cluster distance
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What this shows

The plainest reading of a hierarchical-clustering dendrogram: five samples joined bottom-up, with each internal node placed at its merge height — the cophenetic distance at which its two child clusters fuse. Leaves align on a shared baseline and a cluster-distance axis runs down the side, so the vertical position of every join tells you how similar the samples beneath it are.

Unlike a cladogram (topology only) or a phylogram (branch length = evolutionary distance), here the height of the merge is the message: samples that fuse low are alike, samples that only fuse near the top are distant. This example omits the cut directive on purpose — it is the raw similarity tree, before you commit to a threshold that would carve it into flat clusters.

Phylogenetic tree syntax